Vol. 4 No. 9 (2025)
Articles

Evidence-Grounded Large Language Models for Reliable Clinical Information Extraction from Longitudinal Medical Records

Published 2025-09-30

How to Cite

Moreau, F. (2025). Evidence-Grounded Large Language Models for Reliable Clinical Information Extraction from Longitudinal Medical Records. Journal of Computer Technology and Software, 4(9). Retrieved from https://www.ashpress.org/index.php/jcts/article/view/386

Abstract

Large language models (LLMs) have demonstrated strong capabilities in processing clinical text, but hallucination and insufficient evidence attribution remain major obstacles to their reliable use in medical applications. This paper presents an evidence-grounded LLM framework for extracting clinically relevant information from longitudinal medical records while explicitly linking generated outputs to supporting evidence. The proposed approach combines retrieval-augmented generation with hierarchical clinical document encoding to identify relevant evidence across temporally distributed patient records. An evidence verification module evaluates the consistency between extracted clinical concepts and their supporting source passages, while an uncertainty-aware decoding strategy suppresses predictions with insufficient evidence. The framework is evaluated on clinical information extraction tasks involving diagnoses, medications, symptoms, and treatment histories. Experimental results show improvements in extraction accuracy, evidence consistency, and hallucination reduction compared with standard prompting and retrieval-augmented baselines. The proposed framework provides a practical approach toward more reliable and auditable LLM-based clinical data processing.

References

  1. J. Lee et al., “BioBERT: A pre-trained biomedical language representation model for biomedical text mining,” Bioinformatics, vol. 36, no. 4, pp. 1234–1240, 2020.
  2. H. Zheng, L. Zhu, W. Cui, R. Pan, X. Yan, and Y. Xing, “Selective knowledge injection via adapter modules in large-scale language models,” Proceedings of ICAIDE, pp. 373–377, 2025.
  3. X. Yan, Y. Jiang, W. Liu, D. Yi, and J. Wei, “Transforming Multidimensional Time Series into Interpretable Event Sequences for Advanced Data Mining,” ICHCI, pp. 126–130, 2024.
  4. E. J. Hu et al., “LoRA: Low-rank adaptation of large language models,” International Conference on Learning Representations (ICLR), 2022.
  5. Y. Li, W. Zhao, B. Dang, X. Yan, M. Gao, W. Wang, and M. Xiao, “Research on adverse drug reaction prediction model combining knowledge graph embedding and deep learning,” MLISE, pp. 322–329, 2024.
  6. J. Wei, Y. Liu, X. Huang, X. Zhang, W. Liu, and X. Yan, “Self-Supervised Graph Neural Networks for Enhanced Feature Extraction in Heterogeneous Information Networks,” ICMLCA, pp. 272–276, 2024.
  7. J. N. Acosta, G. J. Falcone, P. Rajpurkar, and E. J. Topol, “Multimodal biomedical AI,” Nature Medicine, vol. 28, pp. 1773–1784, 2022.
  8. H. Zheng, Y. Ma, Y. Wang, G. Liu, Z. Qi, and X. Yan, “Structuring low-rank adaptation with semantic guidance for model fine-tuning,” ICECAI, pp. 731–735, 2025.
  9. W. Wang, Y. Li, X. Yan, M. Xiao, and M. Gao, “Breast cancer image classification method based on deep transfer learning,” International Conference on Image Processing, Machine Learning and Pattern Recognition, pp. 190–197, 2024.
  10. P. Lewis et al., “Retrieval-augmented generation for knowledge-intensive NLP tasks,” Advances in Neural Information Processing Systems, vol. 33, 2020.
  11. X. Yan, W. Wang, M. Xiao, Y. Li, and M. Gao, “Survival prediction across diverse cancer types using neural networks,” Proceedings of the 2024 7th International Conference on Machine Vision and Applications, pp. 134–138, 2024.
  12. B. Shickel, P. J. Tighe, A. Bihorac, and P. Rashidi, “Deep EHR: A survey of recent advances in deep learning techniques for electronic health record analysis,” IEEE Journal of Biomedical and Health Informatics, vol. 22, no. 5, pp. 1589–1604, 2018.
  13. X. Yan, J. Du, X. Li, X. Wang, X. Sun, P. Li, and H. Zheng, “A Hierarchical Feature Fusion and Dynamic Collaboration Framework for Robust Small Target Detection,” IEEE Access, vol. 13, pp. 92953–92964, 2025.
  14. K. Singhal et al., “Large language models encode clinical knowledge,” Nature, vol. 620, pp. 172–180, 2023.
  15. Y. Li, X. Yan, M. Xiao, W. Wang, and F. Zhang, “Investigation of Creating Accessibility Linked Data Based on Publicly Available Accessibility Datasets,” pp. 77–81, 2024.
  16. X. Yan, J. Du, L. Wang, Y. Liang, J. Hu, and B. Wang, “The Synergistic Role of Deep Learning and Neural Architecture Search in Advancing Artificial Intelligence,” ICEDCS, pp. 452–456, 2024.
  17. A. Rajkomar et al., “Scalable and accurate deep learning with electronic health records,” npj Digital Medicine, vol. 1, Art. no. 18, 2018.
  18. M. Xiao, Y. Li, X. Yan, M. Gao, and W. Wang, “Convolutional neural network classification of cancer cytopathology images: Taking breast cancer as an example,” pp. 145–149, 2024.